Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers Recipe
There is something irresistibly comforting about classic treats, and these Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers take that cozy feeling to a whole new level. Imagine biting into soft, tender cookies that boast a subtle tang from Greek yogurt and the rich warmth of peanut butter, all punctuated by pockets of gooey chocolate that melt in your mouth. These cookies strike the perfect balance between indulgence and wholesomeness, making them a fantastic anytime snack that will quickly become a beloved favorite in your home.

Ingredients You’ll Need
Gathering simple, wholesome ingredients is the first step to nailing these delightful cookies. Each one adds its own magic, from Greek yogurt lending moisture and tang to oat flour providing a naturally nutty flavor that keeps the texture tender yet satisfying.
- Greek yogurt: Adds moisture and a slight tang, making the cookies tender and soft.
- Peanut butter (or butter): Brings richness and a subtle nutty dimension that complements the chocolate.
- Honey or maple syrup: Natural sweeteners that add gentle sweetness and help keep the cookies chewy.
- Egg: Binds the ingredients and contributes to the cookie’s structure and softness.
- Vanilla extract: Enhances the overall flavor and deepens the sweetness.
- Oat flour: Offers a wholesome base with a tender texture and light nuttiness.
- Baking powder: Ensures the cookies rise just enough to stay soft and fluffy.
- Salt: Balances sweetness and enhances all the other flavors.
- Chocolate chips: The star of the show that gives those irresistible melty pockets of sweetness.
How to Make Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers
Step 1: Prep Your Oven and Pan
Start by heating your oven to 350°F, and line a baking sheet with parchment paper. This simple prep step ensures the cookies bake evenly and don’t stick due to their wonderfully soft texture. Trust me, parchment paper means easy cleanup and flawless cookie removal every time.
Step 2: Mix Wet Ingredients
In a large bowl, whisk together the Greek yogurt, peanut butter, honey, egg, and vanilla extract. It’s important to whisk vigorously until the mixture is completely smooth—no lumps allowed here, because you want that silky texture to carry through to your cookies. This step also blends all those creamy flavors beautifully.
Step 3: Add Dry Ingredients
Sprinkle the oat flour, baking powder, and salt over your wet ingredients, then gently stir to combine. Be careful not to overmix at this stage as it can make your cookies tough instead of tender and melty. A few gentle folds will do the trick and keep your cookies perfectly soft.
Step 4: Fold in Chocolate Chips
Now for the fun part: add the chocolate chips and fold them in gently with a spatula. For that irresistibly tempting look, save some of the chips to press on top of each cookie before baking. This little touch gives the cookies a bakery-style finish that’s both pretty and delicious.
Step 5: Bake to Perfection
Scoop round tablespoons of dough onto the prepared baking sheet, spacing them about two inches apart so they have room to spread. Pop them in the oven for 10 to 12 minutes, watching for golden edges while the centers remain just a bit soft and underdone. Keep in mind, they will continue cooking on the hot pan once out of the oven, preserving that coveted melty middle sensation.
How to Serve Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers

Garnishes
For an extra touch that elevates these cookies, try sprinkling a tiny pinch of flaky sea salt on top right after baking. It enhances the chocolate’s sweetness and makes every bite pop with contrast. If you’re feeling fancy, a light dusting of powdered sugar or a drizzle of melted dark chocolate also adds beautiful flair and richness.
Side Dishes
These cookies pair wonderfully with a cold glass of milk or a rich cup of coffee for dipping. For a cozy afternoon treat, serve alongside creamy vanilla or cinnamon-spiced Greek yogurt to echo the ingredients inside the cookie. Fresh berries on the side also add a refreshing burst that balances the melty sweetness perfectly.
Creative Ways to Present
Make your cookie platter truly unforgettable by stacking these Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers on a rustic wooden board and surrounding them with bowls of extra chocolate chips and honey for drizzling. Alternatively, sandwich two cookies with a scoop of vanilla ice cream or Greek yogurt in between for an indulgent dessert that’s sure to wow guests.
Make Ahead and Storage
Storing Leftovers
Once cooled, store your leftover cookies in an airtight container at room temperature to maintain their soft texture. They will last beautifully for up to 3 days, retaining that luscious melty center we all crave. Avoid refrigeration, which can dry them out.
Freezing
If you want to keep your cookie stash longer, these freeze effortlessly. Lay them out in a single layer on a tray, freeze until solid, then transfer to a freezer bag or container. Frozen cookies keep well for up to 3 months and thaw quickly at room temperature.
Reheating
To bring back the fresh-baked sensation, warm cookies in a microwave for 10-15 seconds or in a low oven (300°F) for about 5 minutes. This warms the chocolate chips and revives the gorgeous melty centers without drying out the cookies.
FAQs
Can I substitute the peanut butter in this recipe?
Absolutely! You can replace peanut butter with an equal amount of butter for a milder flavor, or try almond or cashew butter for a different nutty twist. Just make sure to use creamy nut butters for the best texture.
Is oat flour necessary, or can I use all-purpose flour?
Oat flour gives these cookies their unique tender crumb and slight nuttiness, but if oat flour isn’t available, all-purpose flour can be used. The texture will be a bit different—slightly less chewy—so just keep an eye on bake times as all-purpose may crisp up faster.
Will these cookies be crispy or soft?
These Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers are designed to be soft and tender, with melting chocolate pockets at the center. They will never get crispy like traditional cookies, so if you’re after that classic crunch, this recipe is not quite it, but the softness is pure comfort.
Can I make these cookies vegan?
To veganize this recipe, swap the egg for a flax or chia egg (1 tablespoon ground seeds + 3 tablespoons water), use maple syrup instead of honey, and choose a vegan peanut butter. Keep in mind texture may vary slightly but they will still be delicious.
How do I prevent the cookies from spreading too much?
Make sure your peanut butter and Greek yogurt aren’t too runny, and avoid excessive mixing of flour to keep gluten development minimal. Chilling the dough for 15-30 minutes before baking also helps the cookies hold their shape better.
Final Thoughts
There is truly nothing like a homemade treat that feels both indulgent and wholesome, and these Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers deliver exactly that. Whether you’re baking for a cozy family night or a casual gathering with friends, this recipe will fill your kitchen with mouthwatering aromas and your heart with pure joy. Give them a try—you’re going to love every soft, chocolatey bite.
Print
Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers Recipe
- Total Time: 22 minutes
- Yield: 12 cookies 1x
- Diet: Low Fat
Description
These Healthy Greek Yogurt Chocolate Chip Cookies feature melty centers and a tender texture. Made with wholesome ingredients like Greek yogurt, peanut butter, oat flour, and natural sweeteners, they offer a delicious treat that’s both nutritious and satisfying. Perfect for a guilt-free snack or dessert, these cookies combine familiar flavors with a soft, chewy bite.
Ingredients
Wet Ingredients
- ½ cup Greek yogurt
- ¼ cup peanut butter (or butter)
- ¼ cup honey or maple syrup
- 1 egg
- 1 teaspoon vanilla extract
Dry Ingredients
- 1 cup oat flour
- ½ teaspoon baking powder
- ¼ teaspoon salt
Add-ins
- ½ cup chocolate chips
Instructions
- Prep Your Oven and Pan: Preheat the oven to 350°F (175°C) and line a large baking sheet with parchment paper. This prevents sticking and ensures easy removal of the soft cookies.
- Mix Wet Ingredients: In a large bowl, whisk together Greek yogurt, peanut butter, honey (or maple syrup), egg, and vanilla extract until completely smooth with no lumps, about 2 minutes.
- Add Dry Ingredients: Sprinkle oat flour, baking powder, and salt over the wet ingredients. Stir gently with a spatula until just combined to avoid developing gluten and producing tough cookies.
- Fold in Chocolate Chips: Add the chocolate chips and fold them into the batter gently using a spatula. Reserve a few chips to press on top of each cookie before baking for a bakery-style look.
- Bake to Perfection: Using a cookie scoop or spoon, drop rounded tablespoons of dough onto the prepared baking sheet, spacing each 2 inches apart. Bake for 10-12 minutes until the edges are golden but the centers remain slightly soft. Remove from oven and allow cookies to continue cooking on the hot pan before transferring to a cooling rack.
Notes
- Use parchment paper or a silicone baking mat to prevent sticking.
- Do not overmix the dough as this can make the cookies tough.
- For nut-free version, substitute peanut butter with sunflower seed butter or additional butter.
- Store cookies in an airtight container at room temperature for up to 3 days or freeze for longer storage.
- Honey and maple syrup work equally well; use your preference.
- Prep Time: 10 minutes
- Cook Time: 12 minutes
- Category: Snack, Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 cookie
- Calories: 110
- Sugar: 7g
- Sodium: 70mg
- Fat: 5g
- Saturated Fat: 1.5g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 13g
- Fiber: 2g
- Protein: 4g
- Cholesterol: 25mg
Keywords: healthy cookies, Greek yogurt cookies, chocolate chip cookies, low fat dessert, oat flour cookies, melty chocolate chip